Index

C

compute_connectivities_umap() (in module iMVP_utils.embedding), [1]

D

draw_2D_hist() (in module iMVP_utils.plots), [1]

E

extract_fasta_and_draw_motifs() (in module iMVP_utils.utils), [1]

G

get_igraph() (in module iMVP_utils.embedding), [1]

get_igraph_from_adjacency() (in module iMVP_utils.embedding), [1] get_sparse_matrix_from_indices_distances_umap() (in module iMVP_utils.embedding), [1]

H

hist_to_spots() (in module iMVP_utils.utils), [1]

I

iMVP_utils module iMVP_utils.clustering module, [1] iMVP_utils.embedding module, [1]

iMVP_utils.plots module, [1] iMVP_utils.utils module, [1]

L

load_sequences_from_fasta() (in module iMVP_utils.utils), [1]

M

module iMVP_utils iMVP_utils.clustering, [1] iMVP_utils.embedding, [1] iMVP_utils.plots, [1] iMVP_utils.utils, [1]

O

onehot_encoder_df() (in module iMVP_utils.embedding), [1]

onehot_encoder_iterable() (in module iMVP_utils.embedding), [1]

P

phase_shift() (in module iMVP_utils.utils), [1]

prepare_kmers_dict() (in module iMVP_utils.utils), [1]

R

retrive_clusters() (in module iMVP_utils.utils), [1] run_HDBSCAN() (in module iMVP_utils.clustering), [1] run_HDBSCAN_GPU() (in module iMVP_utils.clustering), [1] run_HDBSCAN_subclustering() (in module iMVP_utils.clustering), [1]

run_Leiden() (in module iMVP_utils.clustering), [1] run_Louvain() (in module iMVP_utils.clustering), [1] run_UMAP() (in module iMVP_utils.embedding), [1] run_UMAP_GPU() (in module iMVP_utils.embedding), [1]

S

show_logos_cols() (in module iMVP_utils.plots), [1]